Presence of lignin breaking microbes
You usually find these organisms in the gut of insects, specially termites.
If most water bodies have either free floating microbes that can break down lignin, or if there are aquatic animals able to eat wood due to hosting such microbes, then developing the technology for ships before a industrial revolution will be nearly impossible. Any wooden ships would be devoured faster than they can be built.
Boats may still be made out of clay or something else, but you will be limited to small, non-seafaring vessels.